Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs216339 | chr12:6149284 | T/C | 1.92E-12 | 173 | 1.37 | 14.33 | 15.57 | KM Plot |
| PAAD | rs2195921 | chr5:127489754 | A/C | 4.73E-5 | 175 | 16.13 | 13.95 | 7.8 | KM Plot |
| PAAD | rs221091 | chr12:69882324 | C/T | 3.86E-5 | 178 | 6.47 | 12.5 | 17.23 | KM Plot |
| PAAD | rs221793 | chr7:100280896 | A/C | 1.67E-5 | 173 | 3.9 | 14.03 | 15.67 | KM Plot |
| PAAD | rs2231318 | chr1:36602943 | C/T | 2.14E-5 | 176 | 19.47 | 12.2 | 16.27 | KM Plot |
| PAAD | rs2234242 | chr6:41244020 | G/A | 9.83E-5 | 178 | 15.77 | 14.57 | 3.43 | KM Plot |
| PAAD | rs2235740 | chr1:16243424 | C/A | 1.67E-6 | 178 | 15.57 | 14.57 | 3.43 | KM Plot |
| PAAD | rs2235741 | chr1:16243482 | C/T | 1.68E-6 | 178 | 15.67 | 12.88 | 3.43 | KM Plot |
| PAAD | rs2235742 | chr1:16243563 | C/T | 1.68E-6 | 178 | 15.67 | 12.88 | 3.43 | KM Plot |
| PAAD | rs2235743 | chr1:16243571 | C/T | 1.68E-6 | 178 | 15.67 | 12.88 | 3.43 | KM Plot |
| PAAD | rs2235744 | chr1:16243598 | G/A | 1.68E-6 | 178 | 15.67 | 12.88 | 3.43 | KM Plot |
| PAAD | rs2242759 | chr21:37021096 | A/C | 2.29E-6 | 178 | 5.52 | 17.4 | 15.13 | KM Plot |
| PAAD | rs2248020 | chr11:93259965 | A/C | 8.99E-5 | 178 | 32.6 | 15.87 | 13.15 | KM Plot |
| PAAD | rs2248524 | chr11:93255715 | G/A | 8.27E-5 | 178 | 32.45 | 15.87 | 13.13 | KM Plot |
| PAAD | rs2248531 | chr11:93255363 | G/T | 7.39E-5 | 178 | 32.45 | 16.03 | 13.13 | KM Plot |